Xu Lab
Xu Lab
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ABOUT THE LAB
Our lab uses and develops both computational and experimental tools to ask fundamental questions about microbiology. We are especially interested in how microbial communities assemble, adapt, and impact their environments and hosts.
Recent Publications
Natural Carrier-Free Self-Assembled Binary Polyphenol Nanoparticles Remodel the Gut Microenvironment for Inflammatory Bowel Disease Prevention
Developing biocompatible, multi-target therapeutics remains a critical challenge in the management of inflammatory bowel disease (IBD). …
Qiwen Xie
,
Huan Xu
,
Xiaoming Yang
,
Ying Chen
,
Zhenjiang Zech Xu
Cite
DOI
Porphyromonas Gingivalis Induces Intestinal Inflammation through Gingipain-Dependent Gut Microbiome Dysbiosis
Background Porphyromonas gingivalis (Pg), a key pathogen in periodontitis, is implicated in various systemic diseases such as …
Ming Li
,
Jiyun Cui
,
Ru Qu
,
Rulong Liu
,
Yifan Sun
,
Ping Li
,
Juan Liu
,
Adrian Low
,
Xiaochang Huang
,
Fei Gan
,
Zhenjiang Zech Xu
Cite
DOI
Propylparaben Induces Immunotoxicity in Zebrafish via Oxidative Stress and Gut Microbiota-Immune Axis Dysregulation
Propylparaben (PP), a widely used preservative, has an unclear immunotoxicity profile. In this study, zebrafish embryos were exposed to …
Yong Huang
,
Jing Hu
,
Huan Xu
,
Runhao Zhu
,
Liting Liu
,
Xiaomei Chen
,
Yifan Sun
,
Yuwei Zhao
,
Yebing Zhong
,
Bo Cheng
,
Xiaochang Huang
,
Huiqiang Lu
,
Zhenjiang Zech Xu
Cite
DOI
Scikit-Bio: A Fundamental Python Library for Biological Omic Data Analysis
Matthew Aton
,
Daniel McDonald
,
Jorge Cañardo Alastuey
,
Raeed Azom
,
Paarth Batra
,
Valentyn Bezshapkin
,
Evan Bolyen
,
Alexander Cagle
,
J. Gregory Caporaso
,
Justine W. Debelius
,
Kestrel Gorlick
,
Nirmitha Hamsanipally
,
Lars Hunger
,
Aryan Keluskar
,
Disen Liao
,
Yang Young Lu
,
Jose A. Navas-Molina
,
Anders Pitman
,
Jai Ram Rideout
,
Anton Sazonov
,
Bharath Sathappan
,
Karen Schwarzberg Lipson
,
Igor Sfiligoi
,
Chris Tapo
,
Yoshiki Vázquez-Baeza
,
Zijun Wu
,
Zhenjiang Zech Xu
,
Mingsong Sam Ye
,
Jianshu Zhao
,
Rob Knight
,
James T. Morton
,
Qiyun Zhu
Cite
DOI
Dietary Nisin Exacerbates Diabetic Vascular Complications through Gut Microbiota Modulation and NF-κB Signaling
Diabetic vascular complications (DVCs) are a major cause of morbidity in diabetes, with gut microbiota dysbiosis emerging as an …
Liting Liu
,
Yong Huang
,
Huan Xu
,
Yifan Sun
,
Zhenjiang Zech Xu
,
Xiaochang Huang
Cite
DOI
Useful Links
Lab GitHub
Code and projects
Lab Notes
Bioinformatics, research notes
Molecule of the Month
Monthly spotlight on interesting molecules, University of Bristol
Microbe of the Month
Monthly microbe feature from Trends in Microbiology
Microbe of the Month
Monthly microbe feature from the Alpine Microbial Observatory
Meet the team →
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